Typically the, factory installed, disconnect is only for the House ( coach ) batteries.
Disconnect the ground - , negative terminals on both 12volt batteries.
Remember that the trans and engine controller , will lose all memory, and will require about 20 mins. of drive time to start ,re-learn, normal operation.
You may notice some funny idle speed and rough shifting during that time.
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99DSDP 3884, Freightliner, XC, CAT 3126B, 300 HP /ALLISON 3060
2000 Caravan toad, Remco & Blue Ox.
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