Having removed / replaced my 2002 MA rear cap and thoroughly inspecting the drain system, it would be difficult even with a bore scope to look at the drain from the top. The drain is about 6 feet down from the top. Better would be to find the drain exit, and you can put the bore scope up that tube. Even better (but more work) would be to remove the air intake ducting (about 5" diameter) and look through there to undisturb the drain as is condition.
kdnash: I think the later models have both the air intake drain (which on mine is at the very bottom of the intake plenum as water goes "downhill"). And there are also roof drains (not a factor, unless by small chance there is a puncture and all that roof water is falling into the air intake - very unlikely). I suspect the tube you are seeing at the top of the intake might be the roof drains and not the plenum drain.
For the other post, this is what should have been done by the repair dealership. But they so far from the OP's posts have been clueless and non caring to properly diagnose the issue. And I believe they are now trying to get that OP to pay for a complete engine replacement due to their crappy service. I feel sorry for the OP who doesn't have the technical background to realize he is being taken for an expensive ride.
I don't know the specifics of his RV, but if it's anything like mine (very likely) then it's not a design issue (what others are suggesting) but more than likely malicious damage (an insurance claim) OR exactly the type of situation that you have found on yours (Tom's) - poor workmanship from whoever sprayed all that spray foam and clogged up the drain tube.
It's a very simple drain system...if water enters the plenum via the intake (at the top rear of the cap, it runs to the bottom of the plenum and exits out the drain who's opening is at the very bottom of the plenum. The air exits the 5 inch hose that is mounted above the drain. So the plenum would have to fill with gallons of water before entering the turbocharger / engine. Possible if the plenum drain was clogged and much rain occurred. OR that someone put a garden hose into the intake and poured more water than the drain can relieve.
Too bad because I don't think the other OP has the background to protect his wallet.
If it were me and the servicing dealership said "I can't get to your RV to drain the water out for a few weeks", it would have been towed to another place to immediately address the issue to prevent additional rust damage. Which usually means my shop
But any ole parking lot will usually suffice
All of my opinions are only based on silly ole forum posts which are always incomplete and inaccurate...the true story is another thing...