For Anti-lock systems you should use a pressure or vacuum bleeding setup.
If you do the old "crack the bleeder while someone pressed down on the brake pedal" system, I have read that when the pedal hits the floor it can trigger the anti-lock fault light to come on. I have no experience if this is actually true but it sounds reasonable.
All that said - I use a Harbor Freight hand operated vacuum pump (Mighty-Vac knockoff) to bleed brakes, normal and anti-lock, and never had a problem.
Brake Bleeder and Vacuum Pump Kit