First,

Water intrusion is the most common problem with any RV, as you are experiencing. Locating the leak source is very difficult. I recommend locating an RV service center that uses a
SealTech Leak Detection System. Once the source is eliminated, you may then successfully repair the damaged areas.
If you suspect water is running down the side of the slideout and wicking into a seam, you might try placing a length of waterproof tape diagonally along the sides of the outside wall of the slideout, and hopefully re-direct the water away from the floor area some.
Sorry I can't be more help.