Monster99 - that sounds like that would be the least invasive fix. I have used endurobond roof repair tape with great succes. You could inject glue, roll and use a very small piece endurobond to seal the small hole. That would work...but geeez this is a new unit.
If this was a 6 or 7 year old unit that would be a great fix. But on a brand new unit not sure I would want endurobond on it...
I have been in a mobile home where the rubber roof would be noisy on a real windy day as it would 'flap' but not leak.