Two different trans pans available on the 1000 series .
If you have the deep pan that could account for the difference .
But with good performance with only 10.5 quarts added and proper dipstick reading , I'm confused too.
Although , looking at the pans in this photo , and depending on the dipstick location ; a full reading might not be a good indicator .
I'll see if any Allison fluid change documents can give any info .
EDIT: Second thought ; I always have them ;

; perhaps , being over full was the cause of the trans pan gasket leak .
Had you checked fluid level on the dipstick before you drained the fluid ?