See this is only your second post.
In another recent post, someone found out the hard way; 4 days of trial and error; that his transfer switch didn't operate properly without coach battery power. So I think your stuck with a battery charger to bring the batteries up. When you have the batteries up to 12.5v; may take a day or two; with them totally drained, check for approx 14v to the batteries, coach and chassis, with the engine running. Remember that an engine alternator requires power to make power, the lower the power in the battery the lower the alt, output.
Your gen set may have died due to low fuel in the tank, won't pick up fuel unless there is over approx 1/4 >1/3 tank of gas.