The Allison 2000 series , is basically a beefed up 1000 series same as GMC
3/4 and one ton trucks with Duramax or the 8.1L .
When first introduced the GMC trucks with 1000 series had issues with water intrusion into the NSBU module on the side of the transmission . ( Neutral Safety Back Up ). when the signal from the NSBU was scrambled by the moisture the transmission would default to second gear , no matter what speed the vehicle was traveling .
This sound like what's happening to your coach .
I can't remember what year of the 1000 series was involved in the replacement of the NSBU for one with better waterproofing , but 2001 could be suspect .
The NSBU location is shown in this installation manual , for the Arens SBWActuator , that I believe your coach is equipped with .
I'd be inclined to contact Allison transmission head office to see if the build date of your NSBU is suspect , or if they have reports of similar sifting issues like your having.
EDIT : On a re-read of your post , I see this started after storage for months , first thing to check would be for rodent damage to the wiring at the NSBU .
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99DSDP 3884, Freightliner, XC, CAT 3126B, 300 HP /ALLISON 3060
2000 Caravan toad, Remco & Blue Ox.
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