You probably won't need to change anything. AGM batteries have a slightly different voltage charge profile requirement from flooded cell batteries. Newer converter/chargers often manage to work for both. On the other hand there may be a programmable setting in the new charger that will optimize. Check the new converter/charger operator's manual for instructions.
Charging lead/acid batteries consumes water by breaking water down into hydrogen and oxygen. AGM batteries are sealed so, water cannot be added like flooded cells. The chemistry in AGM batteries reabsorbs hydrogen and oxygen gas to replace the lost water. If high voltage is applied to AGM batteries to charge them, too much gas may be produced. Gas will vent. Once vented, there is no way to replace the water.
Many AGM batteries allow use of 14.4 volts when batteries are deeply discharged. The voltage must be decreased to 13.6 as the charge progresses and then to 13.3 for long term storage. Excess voltage may produce venting.
Flooded cell batteries benefit from the same charging profile, but it is not so critical. Water can be replaced if higher voltages are used. Some chargers apply higher voltages for various conditioning reasons. The higher voltages may cause venting in AGM's and so should be avoided.
Change setting to "AGM" if the charger allows. Follow recommendations in operators manual.
My low end WFCO charger does not have a setting for different battery chemistries. It's charging profile works very well for both AGM and flooded cell batteries. It does not apply any "conditioning" charge voltages.
Use a volt meter on the battery terminals while charging to see what the charger actually does. If voltages stays above about 13.6 for long late stage periods or performs bursts of high voltage during idle times, you may wish to investigate further.
I wish you good luck and happy trails ahead!